Our Turnkey Real-time End-to-End (TREE) genomic pipeline and parentage verification and determination service is a species-agnostic and easy to use web interface that features:
- Automated import of raw genotype data from external servers.
- Automatic processing of:
- both Illumina and Affymetrix genotype files;
- all chip densities;
- changes to SNP maps;
- Automated quality control and report generation for:
- “genotype sex” – sex determination and validation;
- parentage verification against a pedigree;
- genotype call rate;
- percentage of AA/AB/BB calls (lab errors);
- multiple genotypes from the same animal.
- Imputation of genotypes to a higher density for single step, if desired.
- Flexible coupling to a single step evaluation system, if desired.
- Web interface for real-time parentage verification & determination.
- Custom report generation/feature development as requested.
- Access to raw data if/when needed.
- Regular and secure cloud-based backups of all data.
- Simple per genotype fee with no setup cost.
We strive for automated turnkey genotype processing, genetic and genomic evaluation, and reporting systems and most importantly, responsive and personalised customer support.