TREE Pipeline

TREE Pipeline

Our Turnkey Real-time End-to-End (TREE) genomic pipeline and parentage verification and determination service is a species-agnostic and easy to use web interface that features:

  • Automated import of raw genotype data from external servers.
  • Automatic processing of:
    • both Illumina and Affymetrix genotype files;
    • all chip densities;
    • changes to SNP maps;
  • Automated quality control and report generation for:
    •  “genotype sex” – sex determination and validation;
    • parentage verification against a pedigree;
    • genotype call rate;
    • percentage of AA/AB/BB calls (lab errors);
    • multiple genotypes from the same animal.
  • Imputation of genotypes to a higher density for single step, if desired.
  • Flexible coupling to a single step evaluation system, if desired.
  • Web interface for real-time parentage verification & determination.
  • Custom report generation/feature development as requested.
  • Access to raw data if/when needed.
  • Regular and secure cloud-based backups of all data.
  • Simple per genotype fee with no setup cost.

We strive for automated turnkey genotype processing, genetic and genomic evaluation, and reporting systems and most importantly, responsive and personalised customer support.